Worldwide Protein Data Bank validation information: usage and trends

• Autoři: SMART Oliver S.; HORSKÝ Vladimír; GORE Swanand; SVOBODOVÁ VAŘEKOVÁ Radka; BENDOVÁ Veronika; KLEYWEGT Gerard J.; VELANKAR Sameer
• Rok publikování: 2018
• Druh: Článek v odborném periodiku
• Časopis / Zdroj: Acta Crystallographica Section D
• Fakulta / Pracoviště MU: Středoevropský technologický institut
• www: https://journals.iucr.org/d/issues/2018/03/00/ba5288/index.html
• Doi: http://dx.doi.org/10.1107/S2059798318003303
• Klíčová slova: PDB; Protein Data Bank; three-dimensional macromolecular structure; validation; quality control; X-ray crystallography; ValTrendsDB
• Popis: It is shown how validation metrics can be combined to produce an overall score that allows the ranking of macromolecular structures and domains in search results. Additionally, ValTrendsDB database is presented: It provides users with a convenient way to access and analyse validation information and other properties of X-ray crystal structures in the PDB, including investigating trends in and correlations between different structure properties and validation metrics.

Související projekty

• ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences
• Česká národní infrastruktura pro biologická data
• Matematické statistické modelování 2