CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

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Authors	KOZLÍKOVÁ Barbora ŠEBESTOVÁ Eva ŠUSTR Vilém BREZOVSKÝ Jan STRNAD Ondřej DANIEL Lukáš BEDNÁŘ David PAVELKA Antonín MANAK Martin BEZDĚKA Martin BENEŠ Petr KOTRY Matúš GORA Artur Wiktor DAMBORSKÝ Jiří SOCHOR Jiří
Year of publication	2014
Type	Article in Periodical
Magazine / Source	Bioinformatics
MU Faculty or unit	Faculty of Informatics
Citation
Doi	http://dx.doi.org/10.1093/bioinformatics/btu364
Field	Informatics
Keywords	protein; visualization; tunnel; cavity
Description	The transport of ligands, ions or solvent molecules into proteins with buried binding sites or through the membrane is enabled by protein tunnels and channels. CAVER Analyst is a software tool for calculation, analysis and real-time visualization of access tunnels and channels in static and dynamic protein structures. It provides an intuitive graphic user interface for setting up the calculation and interactive exploration of identified tunnels/channels and their characteristics.
Related projects:	Center of Computer Graphics Analysis and Visualization of Protein Structures Výzkum FI ve vybraných oblastech aplikované informatiky