eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems

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Authors

TROJÁK Matej ŠAFRÁNEK David BROZMANN Branislav BRIM Luboš

Year of publication 2022
Type Article in Proceedings
Conference 20th International Conference on Computational Methods in Systems Biology
MU Faculty or unit

Faculty of Informatics

Citation
Web https://doi.org/10.1007/978-3-031-15034-0_17
Doi http://dx.doi.org/10.1007/978-3-031-15034-0_17
Keywords rule-based modelling; regulations; SBML; Galaxy tool
Description eBCSgen is a software tool for developing and analysing models written in Biochemical Space Language (BCSL). BCSL is a rule-based language designed for the description of biological systems with rewriting rules in the form of behavioural patterns. This tool paper describes a new version of the tool, implementing the support for regulations, a mechanism suitable for reducing the branching behaviour of concurrent systems. Additionally, the presented version provides export to SBML, and support for CTL model checking. The paper artefact is available via https://doi.org/10.5281/zenodo.6644973.
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