CAVER Viewer-new tool enhancing computation and visualization of channels in proteins

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Authors	KOZLÍKOVÁ Barbora SOCHOR Jiří SZABÓ Tibor ZAMBORSKÝ Matúš
Year of publication	2010
Type	Article in Proceedings
Conference	The IADIS Computer Graphics, Visualization, Computer Vision and Image Processing (CGVCVIP) 2010
MU Faculty or unit	Faculty of Informatics
Citation
Field	Informatics
Keywords	CAVER; CAVER Viewer; visualization; protein; channel; molecular dynamics
Description	In this article, we describe the CAVER Viewer as the next tile in the mosaic of protein visualization programs. CAVER Viewer provides enhanced interface for channel analysis and a set of traditional and new techniques for visualization of the results. With the CAVER Viewer, users can explore specific paths in protein structure, which are called channels. Channels may be explored in the three-dimensional space of the molecule using the two-dimensional information and statistics, visualized as 2D graphs and connected with the 3D displaying window. In comparison to the existing applications, our program also enables working with large data sets obtained from dynamic simulations of protein behavior.
Related projects:	Center of Biocatalysis and Biotransformation Visualization of protein structures