E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes

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Authors

ŠAFRÁNEK David ČERVENÝ Jan KLEMENT Matej POSPÍŠILOVÁ Jana BRIM Luboš LAZÁR Dušan NEDBAL Ladislav

Year of publication 2011
Type Article in Periodical
Magazine / Source BioSystems
MU Faculty or unit

Faculty of Informatics

Citation
Web http://www.sciencedirect.com/science/article/pii/S030326471000198X
Doi http://dx.doi.org/10.1016/j.biosystems.2010.10.013
Field Informatics
Keywords Biomodels repository; Computational models; Photosynthesis; Systems biology; Web platform
Description E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis. We report on the first phase implementation of the tool new version and demonstrate the functionalities of model visualization, presentation of model components, rate constants, initial conditions and of model annotation. The demonstration also includes export of a model to the Systems Biology Markup Language format and remote numerical simulation of the model.
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