Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 836
2011
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Influence of Zinc(II) and Copper(II) Ions on Streptomyces Bacteria Revealed by Electrochemistry
International Journal of Electrochemical Science, year: 2011, volume: 6, edition: 6
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Interpretation of substituent effects on 13C and 15N NMR chemical shifts in 6-substituted purines
Physical Chemistry Chemical Physics, year: 2011, volume: 13, edition: 35, DOI
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Keyhole-Lock-Key Model of Enzymatic Catalysis
Year: 2011, type:
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Kryogenická postseparační úprava polyakrylamidových gelů prometaloproteomické analýzy kombinací gelové elektroforézy, laserové ablace a hmotnostní spektrometrie s ionizací indukčně vázaným plazmatem
Chemicke listy, year: 2011, volume: 105, edition: 11
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Kvantifikace proteinových biomarkerů pomocí hmotnostní spektrometrie pracující v režimu monitorování vybraných reakcí
Chemické listy, year: 2011, volume: 105, edition: 11
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Kvantové tečky: příprava, konjugace a využití v bioanalytické chemii a biologii
Chemické listy, year: 2011, volume: 105, edition: 8
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Metabolism of thyroid hormones in murine white adipose tissue: Potential involvement of leptin
Year: 2011, type: Conference abstract
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Metabolite target analysis of cell extract of bacterium Paracoccus denitrificans
Year: 2011, type: Conference abstract
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Metabolomika – základní pojmy, strategie a metodologie
Chemické listy, year: 2011, volume: 105, edition: 10
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Molecular bases of enantioselectivity of haloalkane dehalogenase DbjA.
Year: 2011, type: Appeared in Conference without Proceedings