Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 836
2013
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CH-pi Interaction between Carbohydrates and Aromatic Moieties: Electron Density Issue
Year: 2013, type: Conference abstract
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Toward Reproducing Sequence Trends in Phosphorus Chemical Shifts for Nucleic Acids by MD/DFT Calculations
Journal of Chemical Theory and Computation, year: 2013, volume: 9, edition: 3, DOI
2012
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2D-PAGE Database for Studies on Energetic Metabolism of the Denitrifying Bacterium Paracoccus denitrificans
INTEGRATIVE PROTEOMICS / Book 2, year: 2012, number of pages: 16 s.
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Biotinylation of quantum dots for application in fluoroimmunoassays with biotin-avidin amplification
Microchimica Acta, year: 2012, volume: 176, edition: 3-4, DOI
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Dual roles of the SUMO-interacting motif in the regulation of Srs2 sumoylation.
Nucleic Acids Research, year: 2012, volume: 40, edition: 16, DOI
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Electrochemical Immunosensor Coupled to Cyclone Air Sampler for Detection of Escherichia coli DH5 alpha in Bioaerosols
Electroanalysis, year: 2012, volume: 24, edition: 3, DOI
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Exploring the Nature of Carbohydrate-Aromatic Dispersion Interactions via Sophisticated Computational Chemistry Tools
Year: 2012, type: Conference abstract
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Free energy calculation in lectin/saccharide complexes
Year: 2012, type: Conference abstract
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In Silico Engineering of Proteins that Recognize Small Molecules
Protein Engineering, year: 2012, number of pages: 38 s.
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Influence of stereochemistry on proton transfer in protonated tripeptide models
Journal of Molecular Modeling, year: 2012, volume: 18, edition: 3, DOI