2014

• QM Computations on Complete Nucleic Acids Building Blocks: Analysis of the Sarcin-Ricin RNA Motif Using DFT-D3, HF-3c, PM6-D3H, and MM Approaches

  KRUSE Holger HAVRILA Marek ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2014, volume: 10, edition: 6, DOI

• Role of S-turn2 in the Structure, Dynamics, and Function of Mitochondrial Ribosomal A-Site. A Bioinformatics and Molecular Dynamics Simulation Study

  PANECKA Joanna HAVRILA Marek RÉBLOVÁ Kamila ŠPONER Jiří TRYLSKA Joanna

  Article in Periodical

  Journal of Physical Chemistry B, year: 2014, volume: 118, edition: 24, DOI

• Structure and semi-sequence-specific RNA binding of Nrd1

  BAČÍKOVÁ Veronika PASULKA Josef KUBÍČEK Karel ŠTEFL Richard

  Article in Periodical

  Nucleic Acids Research, year: 2014, volume: 42, edition: 12, DOI

2013

• Mammalian DIS3L2 exoribonuclease targets the uridylated precursors of let-7 miRNAs

  USTIANENKO Dmytro HROŠŠOVÁ Dominika POTĚŠIL David CHALUPNÍKOVÁ Kateřina HRAZDILOVÁ Kristýna PACHERNÍK Jiří CETKOVSKÁ Kateřina ULDRIJAN Stjepan ZDRÁHAL Zbyněk VAŇÁČOVÁ Štěpánka

  Article in Periodical

  RNA, year: 2013, volume: 19, edition: 12, DOI

• The CTD code of RNA polymerase II: a structural view

  JASNOVIDOVA Olga ŠTEFL Richard

  Article in Periodical

  Wiley Interdisciplinary Reviews: RNA, year: 2013, volume: 4, edition: 1, DOI

2012

• Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation

  HOLUB Peter LALÁKOVÁ Jana ČERNÁ Hana PASULKA Josef SÁRAZOVÁ Marie HRAZDILOVÁ Kristýna SAŇUDO ARCE Maria HÓBOR Fruzsina ŠTEFL Richard VAŇÁČOVÁ Štěpánka

  Article in Periodical

  Nucleic Acids Research, year: 2012, volume: 40, edition: 12, DOI

• Can We Accurately Describe the Structure of Adenine Tracts in B-DNA? Reference Quantum-Chemical Computations Reveal Overstabilization of Stacking by Molecular Mechanics

  BANÁŠ Pavel MLÁDEK Arnošt OTYEPKA Michal ZGARBOVA Marie JURECKA Petr SVOZIL Daniel LANKAŠ Filip ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 7, DOI

• Comment on "Computational Model for Predicting Experimental RNA and DNA Nearest-Neighbor Free Energy Rankings"

  ŠPONER Jiří MORGADO Claudio A SVOZIL Daniel

  Article in Periodical

  Journal of Physical Chemistry B, year: 2012, volume: 116, edition: 28, DOI

• In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1 dependent transcription termination

  PORRUA-FUERTE Odil HÓBOR Fruzsina BOULAY Jocelyne KUBÍČEK Karel D’AUBENTON-CARAFA Yves GUDIPATI Rajani Kanth ŠTEFL Richard LIBRI Domenico

  Article in Periodical

  EMBO Journal, year: 2012, volume: 31, edition: 19, DOI

• Recognition of asymmetrically dimethylated arginine by TDRD3

  ŠIKORSKÝ Tomáš HÓBOR Fruzsina KRIŽANOVÁ Eva PASULKA Josef KUBÍČEK Karel ŠTEFL Richard

  Article in Periodical

  Nucleic Acids Research, year: 2012, volume: 40, edition: 22, DOI