Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 836
2012
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Type I iodothyronine 5’-deiodinase mRNA and activity is increased in adipose tissue of obese subjects
International Journal of Obesity, year: 2012, volume: 36, edition: 2, DOI
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Understanding the Sequence Preference of Recurrent RNA Building Blocks using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform
Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 1, DOI
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Use of 82Br and 131I radionuclides in studies of goitrogenic effects of exogenous bromide
Journal of Radioanalytical and Nuclear Chemistry, year: 2012, volume: 291, edition: 2, DOI
2011
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1H, 13C, and 15N resonance assignments for the CTD-Interacting Domain of Nrd1 bound to Ser5-phosphorylated CTD of RNA Polymerase II
Biomolecular NMR Assignments, year: 2011, volume: 5, edition: 2, DOI
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5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion
Journal of Biomolecular NMR, year: 2011, volume: 50, edition: 1, DOI
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A new isoflavanone from Iresine herbstii
Fitoterapia, year: 2011, volume: 82, edition: 2, DOI
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A Prospective Non-invasive Assessment of a Human Embryo Viability Based on Capillary Electrophoresis
Year: 2011, type: Conference abstract
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Achromobacter marplatensis sp. nov. isolated from a pentachlorophenol-contaminated soil
International Journal of Systematic and Evolutionary Microbiology, year: 2011, volume: 61, edition: 9, DOI
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Amino Acids Footprinting Based on Capillary Electrophoresis for Non-invasive Assessment of Human Embryo Viability
Year: 2011, type: Conference abstract
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Anaerobic ferric iron reduction by acidophilic biomining bacteria
Year: 2011, type: Conference abstract